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1

Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression

Selamat, S. A., Chung, B. S., Girard, L., Zhang, W., Zhang, Y., Campan, M., Siegmund, K. D., Koss, M. N., Hagen, J. A., Lam, W. L., Lam, S., Gazdar, A. F., Laird-Offringa, I. A.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

2

What determines the instability of c-myc proto-oncogene mRNA?

Ite A. Laird-Offringa

Journal:

Year:

1992

Language:

english

File:

PDF, 777 KB

english, 1992

3

Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users

Phinikoula S. Katsamba, Iva Navratilova, Maria Calderon-Cacia, Linsey Fan, Kevin Thornton, Mingde Zhu, Tim Vanden Bos, Carla Forte, Della Friend, Ite Laird-Offringa, Gisele Tavares, John Whatley, Erga

Journal:

Analytical Biochemistry

Year:

2006

Language:

english

File:

PDF, 1.98 MB

english, 2006

4

RNA-binding proteins tamed

Laird-Offringa, Ite A., Belasco, Joel G.

Journal:

Natural Structural Biology

Year:

1998

Language:

english

File:

PDF, 124 KB

english, 1998

5

DNA methylation analysis: a powerful new tool for lung cancer diagnosis

Tsou, Jeffrey A, Hagen, Jeffrey A, Carpenter, Catherine L, Laird-Offringa, Ite A

Journal:

Year:

2002

Language:

english

File:

PDF, 166 KB

english, 2002

6

Low level anti-Hu reactivity: A risk marker for small cell lung cancer?

Tsou, Jeffrey A., Kazarian, Meleeneh, Patel, Ankur, Galler, Janice S., Laird-Offringa, Ite A., Carpenter, Catherine L., London, Stephanie J.

Journal:

Cancer Detection and Prevention

Year:

2009

Language:

english

File:

PDF, 325 KB

english, 2009

7

Immune response in lung cancer mouse model mimics human anti-Hu reactivity

Meleeneh Kazarian, Joaquim Calbo, Natalie Proost, Catherine L. Carpenter, Anton Berns, Ite A. Laird-Offringa

Journal:

Journal of Neuroimmunology

Year:

2009

Language:

english

File:

PDF, 1.36 MB

english, 2009

8

Small-cell lung cancer-associated autoantibodies: potential applications to cancer diagnosis, early detection, and therapy

Meleeneh Kazarian, Ite A Laird-Offringa

Journal:

Molecular Cancer

Year:

2011

Language:

english

File:

PDF, 1.34 MB

english, 2011

9

Solution Structure of the Complex Formed by the Two N-terminal RNA-binding Domains of Nucleolin and a Pre-rRNA Target

Carina Johansson, L.David Finger, Lukas Trantirek, Thomas D Mueller, Soyoun Kim, Ite A Laird-Offringa, Juli Feigon

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 3.44 MB

english, 2004

10

Kinetic studies of RNA–protein interactions using surface plasmon resonance

Phinikoula S. Katsamba, Sungmin Park, Ite A. Laird-Offringa

Journal:

Year:

2002

Language:

english

File:

PDF, 240 KB

english, 2002

11

DNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene Regulation

Yongheng Chen, Darren L. Bates, Raja Dey, Po-Han Chen, Ana Carolina Dantas Machado, Ite A. Laird-Offringa, Remo Rohs, Lin Chen

Journal:

Year:

2012

Language:

english

File:

PDF, 1.15 MB

english, 2012

12

P-291 Distinct DNA methylation profiles in malignant mesothelioma, lung adenocarcinoma, and non-tumor lung

Tsou, Jeffrey A., Shen, Linda Y.C., Siegmund, Kimberly D., Long, Tiffany I., Laird, Peter W., Seneviratne, Chandrika, Koss, Michael N., Pass, Harvey I., Hagen, Jeffrey A., Laird-Offringa, Ite A.

Journal:

Year:

2003

Language:

english

File:

PDF, 362 KB

english, 2003

13

147 DNA methylation profile of 28 candidate marker loci in malignant mesothelioma

Tsou, J.A., Galler, J.S., Wali, A., Pass, H.I., Siegmund, K.D., Ye, W., Groshen, S., Weisenberger, D., Campan, M., Laird, P.W., Turla, S., Koss, M.N., Laird-Offringa, I.A.

Journal:

Year:

2006

Language:

english

File:

PDF, 46 KB

english, 2006

14

Distinct DNA methylation profiles in malignant mesothelioma, lung adenocarcinoma, and non-tumor lung

Tsou, Jeffrey A., Shen, Linda Y.C., Siegmund, Kimberly D., Long, Tiffany I., Laird, Peter W., Seneviratne, Chandrika K., Koss, Michael N., Pass, Harvey I., Hagen, Jeffrey A., Laird-Offringa, Ite A.

Journal:

Year:

2005

Language:

english

File:

PDF, 370 KB

english, 2005

15

DNA methylation profile of 28 potential marker loci in malignant mesothelioma

Tsou, Jeffrey A., Galler, Janice S., Wali, Anil, Ye, Wei, Siegmund, Kimberly D., Groshen, Susan, Laird, Peter W., Turla, Sally, Koss, Michael N., Pass, Harvey I., Laird-Offringa, Ite A.

Journal:

Year:

2007

Language:

english

File:

PDF, 686 KB

english, 2007

16

Identification of a panel of sensitive and specific DNA methylation markers for lung adenocarcinoma

Jeffrey A Tsou, Janice S Galler, Kimberly D Siegmund, Peter W Laird, Sally Turla, Wendy Cozen, Jeffrey A Hagen, Michael N Koss, Ite A Laird-Offringa

Journal:

Molecular Cancer

Year:

2007

Language:

english

File:

PDF, 1.04 MB

english, 2007

17

Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer

Paul P Anglim, Janice S Galler, Michael N Koss, Jeffrey A Hagen, Sally Turla, Mihaela Campan, Daniel J Weisenberger, Peter W Laird, Kimberly D Siegmund, Ite A Laird-Offringa

Journal:

Molecular Cancer

Year:

2008

Language:

english

File:

PDF, 851 KB

english, 2008

18

DNA methylation-based biomarkers for early detection of non-small cell lung cancer: an update

Paul P Anglim, Todd A Alonzo, Ite A Laird-Offringa

Journal:

Molecular Cancer

Year:

2008

Language:

english

File:

PDF, 404 KB

english, 2008

19

Epigenetic Therapy in Lung Cancer

Liu, Stephen V., Fabbri, Muller, Gitlitz, Barbara J., Laird-Offringa, Ite A.

Journal:

Frontiers in Oncology

Year:

2013

Language:

english

File:

PDF, 513 KB

english, 2013

20

Classification of Individual Lung Cancer Cell Lines Based on DNA Methylation Markers

Marchevsky, Alberto M., Tsou, Jeffrey A., Laird-Offringa, Ite A.

Journal:

The Journal of Molecular Diagnostics

Year:

2004

Language:

english

File:

PDF, 124 KB

english, 2004

21

Effects of low dose dopamine on gastric function

Marchevsky, Alberto M., Tsou, Jeffrey A., Laird-Offringa, Ite A.

Journal:

Clinical Nutrition

Year:

1989

Language:

english

File:

PDF, 102 KB

english, 1989

22

Analysis of Protein–RNA Complexes Involving a RNA Recognition Motif Engineered To Bind Hairpins with Seven- and Eight-Nucleotide Loops

Blakeley, Brett D., Shattuck, Jenifer, Coates, Melissa B., Tran, Evelyn, Laird-Offringa, Ite A., McNaughton, Brian R.

Journal:

Year:

2013

Language:

english

File:

PDF, 614 KB

english, 2013

23

Two Functionally Distinct Steps Mediate High Affinity Binding of U1A Protein to U1 Hairpin II RNA

Katsamba, P. S., Myszka, D. G., Laird-Offringa, I. A.

Journal:

Journal of Biological Chemistry

Year:

2001

Language:

english

File:

PDF, 903 KB

english, 2001

24

Characterization of the Interaction between Neuronal RNA-binding Protein HuD and AU-rich RNA

Park-Lee, S., Kim, S., Laird-Offringa, I. A.

Journal:

Journal of Biological Chemistry

Year:

2003

Language:

english

File:

PDF, 931 KB

english, 2003

25

A comparison of cluster analysis methods using DNA methylation data

Siegmund, K. D., Laird, P. W., Laird-Offringa, I. A.

Journal:

Year:

2004

Language:

english

File:

PDF, 104 KB

english, 2004

26

HuD RNA Recognition Motifs Play Distinct Roles in the Formation of a Stable Complex with AU-Rich RNA

Park, S., Myszka, D. G., Yu, M., Littler, S. J., Laird-Offringa, I. A.

Journal:

Molecular and Cellular Biology

Year:

2000

Language:

english

File:

PDF, 1.08 MB

english, 2000

27

HuD RNA Recognition Motifs Play Distinct Roles in the Formation of a Stable Complex with AU-Rich RNA

Park, S., Myszka, D. G., Yu, M., Littler, S. J., Laird-Offringa, I. A.

Journal:

Molecular and Cellular Biology

Year:

2004

Language:

english

File:

PDF, 97 KB

english, 2004

28

The role of the C-terminal helix of U1A protein in the interaction with U1hpII RNA

Law, M. J., Lee, D. S., Lee, C. S., Anglim, P. P., Haworth, I. S., Laird-Offringa, I. A.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 4.97 MB

english, 2013

29

Analysis of polyadenylation site usage of the c-myc oncogene

Laird-Offringa, Itc A., ElfTerich, Peter, Knaken, Heleen J., de Ruiter, Joke, van der Eb, Alex J.

Journal:

Nucleic Acids Research

Year:

1989

Language:

english

File:

PDF, 3.41 MB

english, 1989

30

Knockout mice reveal key roles for claudin 18 in alveolar barrier properties and fluid homeostasis

Li, Guanglei, Flodby, Per, Luo, Jiao, Kage, Hidenori, Sipos, Arnold, Gao, Danping, Ji, Yanbin, Beard, LaMonta L, Marconett, Crystal N, DeMaio, Lucas, Kim, Yong Ho, Kim, Kwang-Jin, Laird-Offringa, Ite

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.93 MB

english, 2014

31

Conformationally restricted nucleotides as a probe of structure-function relationships in RNA

Julien, K. R., Sumita, M., Chen, P.-H., Laird-Offringa, I. A., Hoogstraten, C. G.

Journal:

Year:

2008

Language:

english

File:

PDF, 583 KB

english, 2008

32

Rapid c-myc mRNA degradation does not require (A + U)-rich sequences or complete translation of the mRNA

Laird-Offringa, Ite A., Elfferich, Peter, Eb, A.J.van der

Journal:

Nucleic Acids Research

Year:

1991

Language:

english

File:

PDF, 6.82 MB

english, 1991

33

Post-Transcriptional Deregulation of myc Genes in Lung Cancer Cell Lines

Bernasconi, Nadia L., Wormhoudt, Theodora A. M., Laird-Offringa, Ite A.

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2000

Language:

english

File:

PDF, 519 KB

english, 2000

34

GRP78 Regulates ER Homeostasis and Distal Epithelial Cell Survival During Lung Development

Flodby, Per, Li, Changgong, Liu, Yixin, Wang, Hongjun, Marconett, Crystal N., Laird-Offringa, Ite A, Minoo, Parviz, Lee, Amy S., Zhou, Beiyun

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2016

Language:

english

File:

PDF, 5.85 MB

english, 2016

35

Combinations of differentiation markers distinguish subpopulations of alveolar epithelial cells in adult lung

Liebler, Janice M., Marconett, Crystal N., Juul, Nicholas, Wang, Hongjun, Liu, Yixin, Flodby, Per, Laird-Offringa, Ite A., Minoo, Parviz, Zhou, Beiyun

Journal:

AJP Lung Cellular and Molecular Physiology

Year:

2016

Language:

english

File:

PDF, 2.02 MB

english, 2016

36

Functional lung adenocarcinoma risk SNPs identified through positional integration with human alveolar epithelial cell epigenomes

Yang, Chenchen, Stueve, Theresa Ryan, Marconett, Crystal Nicole, Rhie, Suhn Kyong, Luo, Jiao, Zhou, Beiyun, Borok, Zea, Laird-Offringa, Ite A.

Journal:

Journal of Thoracic Oncology

Year:

2016

Language:

english

File:

PDF, 64 KB

english, 2016

37

An Evolved RNA Recognition Motif That Suppresses HIV-1 Tat/TAR-Dependent Transcription

Crawford, David W, Blakeley, Brett D., Chen, Po-Han, Sherpa, Chringma, Le Grice, Stuart F.J., Laird-Offringa, Ite A., McNaughton, Brian R

Journal:

ACS Chemical Biology

Year:

2016

Language:

english

File:

PDF, 1.45 MB

english, 2016

38

The importance of detailed epigenomic profiling of different cell types within organs

Stueve, Theresa Ryan, Marconett, Crystal N, Zhou, Beiyun, Borok, Zea, Laird-Offringa, Ite A

Journal:

Year:

2016

Language:

english

File:

PDF, 1.62 MB

english, 2016

39

Analysis of RNA-binding proteins by in vitro genetic selection: identification of an amino acid residue important for locking U1A onto its RNA target.

Laird-Offringa, I. A., Belasco, J. G.

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 1.35 MB

english, 1995

40

Analysis of RNA-Binding Proteins by In vitro Genetic Selection: Identification of an Amino Acid Residue Important for Locking U1A onto its RNA Target

Ite A. Laird-Offringa and Joel G. Belasco

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 1.10 MB

english, 1995

41

Poly(A) tail shortening is the translation-dependent step in c-myc mRNA degradation.

Laird-Offringa, I A, de Wit, C L, Elfferich, P, van der Eb, A J

Journal:

Molecular and Cellular Biology

Year:

1990

Language:

english

File:

PDF, 2.40 MB

english, 1990

42

CDKN2A/p16 Inactivation Mechanisms and Their Relationship to Smoke Exposure and Molecular Features in Non–Small-Cell Lung Cancer

Tam, Kit W., Zhang, Wei, Soh, Junichi, Stastny, Victor, Chen, Min, Sun, Han, Thu, Kelsie, Rios, Jonathan J., Yang, Chenchen, Marconett, Crystal N., Selamat, Suhaida. A., Laird-Offringa, Ite A., Taguch

Journal:

Journal of Thoracic Oncology

Year:

2013

Language:

english

File:

PDF, 2.98 MB

english, 2013

43

Data on isoaspartylation of neuronal ELAVL proteins

Pulido, Mario A., DerHartunian, Meleeneh Kazarian, Sehgal, Prerna, Laird-Offringa, Ite A.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.24 MB

english, 2016

44

[Methods in Enzymology] Combinatorial Chemistry Volume 267 || [9] In vitro genetic analysis of RNA-binding proteins using phage display libraries

Laird-Offringa, Ite A.

Year:

1996

Language:

english

File:

PDF, 2.13 MB

english, 1996

45

P2-017: DNA Methylation Changes in Developing Lung Adenocarcinoma

Galler, Janice S., Kerr, Keith M., Laird-Offringa, Ite A.

Journal:

Journal of Thoracic Oncology

Year:

2007

Language:

english

File:

PDF, 164 KB

english, 2007

46

Genome-Scale Screen for DNA Methylation-Based Detection Markers for Ovarian Cancer

Campan, Mihaela, Moffitt, Melissa, Houshdaran, Sahar, Shen, Hui, Widschwendter, Martin, Daxenbichler, Günter, Long, Tiffany, Marth, Christian, Laird-Offringa, Ite A., Press, Michael F., Dubeau, Louis,

Journal:

Year:

2011

Language:

english

File:

PDF, 1.81 MB

english, 2011

47

The Role of DNA Methylation in the Development and Progression of Lung Adenocarcinoma

Kerr, Keith M., Galler, Janice S., Hagen, Jeffrey A., Laird, Peter W., Laird-Offringa, Ite A.

Journal:

Disease Markers

Year:

2007

Language:

english

File:

PDF, 1.31 MB

english, 2007

48

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 â¢ Denver Colorado - ()] C27. GENETIC PROGRAMS DRIVING LUNG DEVELOPMENT AND REGENERATION - HDAC3 And GATA-6/p300 Coordinately Regulate Type I Cell-Specific Aquaporin-5 (Aqp5) Gene Expression During Alveolar Epithelial Cell (AEC) Transdifferentiation

Zhou, Beiyun, Liu, Yixin, Marconett, Crystal, Ann, David K., Flodby, Per, Minoo, Parviz, Kahn, Michael, Crandall, Edward D., Laird-Offringa, Ite A, Borok, Zea

Year:

2011

File:

PDF, 21 KB

2011

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